| 8/30/2012 | Eastern Washington | 20 | at | Idaho | 3 | vs BSky (1AA) | ||
| Sacramento State | 19 | at | New Mexico State | 49 | vs BSky (1AA) | |||
| Southern Utah | 3 | at | Utah State | 34 | vs BSky (1AA) | |||
| 8/31/2012 | San Jose State | 17 | at | Stanford | 20 | @ P12 | ||
| 9/1/2012 | Texas State | 30 | at | Houston | 13 | @ CUSA | ||
| Texas-San Antonio | 33 | at | South Alabama | 31 | @ SBC | |||
| 9/7/2012 | Utah | 20 | at | Utah State | 27 | OT | vs P12 | |
| 9/8/2012 | Idaho | 13 | at | Bowling Green | 21 | @ MAC | ||
| Louisiana Tech | 56 | at | Houston | 49 | @ CUSA | |||
| New Mexico State | 24 | at | Ohio | 51 | @ MAC | |||
| UC Davis | 13 | at | San Jose State | 45 | vs BSky (1AA) | |||
| Texas Tech | 58 | at | Texas State | 10 | vs B12 | |||
| Texas A&M-Commerce | 16 | at | Texas-San Antonio | 27 | vs LSC (D2) | |||
| 9/15/2012 | Texas-San Antonio | 38 | at | Georgia State | 14 | @ CAAF (1AA) | ||
| Rice | 37 | at | Louisiana Tech | 56 | vs CUSA | |||
| Idaho | 14 | at | LSU | 63 | @ SEC | |||
| Colorado State | 20 | at | San Jose State | 40 | vs MW | |||
| New Mexico State | 28 | at | UTEP | 41 | @ CUSA | |||
| Utah State | 14 | at | Wisconsin | 16 | @ B10 | |||
| 9/22/2012 | Utah State | 31 | at | Colorado State | 19 | @ MW | ||
| Wyoming | 40 | at | Idaho | 37 | OT | vs MW | ||
| Louisiana Tech | 52 | at | Illinois | 24 | @ B10 | |||
| New Mexico | 27 | at | New Mexico State | 14 | vs MW | |||
| San Jose State | 38 | at | San Diego State | 34 | @ MW | |||
| Stephen F. Austin | 37 | at | Texas State | 41 | vs SLC (1AA) | |||
| Northwestern Oklahoma State | 3 | at | Texas-San Antonio | 56 | vs GAC (D2) | |||
| 9/29/2012 | San Jose State | 12 | at | Navy | 0 | @ Ind | ||
| Texas-San Antonio | 35 | at | New Mexico State | 14 | ||||
| Idaho | 0 | at | North Carolina | 66 | @ ACC | |||
| Nevada | 34 | at | Texas State | 21 | vs MW | |||
| UNLV | 13 | at | Utah State | 35 | vs MW | |||
| Louisiana Tech | 44 | at | Virginia | 38 | @ ACC | |||
| 10/5/2012 | Utah State | 3 | at | BYU | 6 | @ Ind | ||
| 10/6/2012 | New Mexico State | 18 | at | Idaho | 26 | |||
| UNLV | 31 | at | Louisiana Tech | 58 | vs MW | |||
| Texas State | 14 | at | New Mexico | 35 | @ MW | |||
| 10/13/2012 | Texas A&M | 59 | vs | Louisiana Tech | 57 | Shreveport LA | vs SEC | |
| Texas-San Antonio | 14 | at | Rice | 34 | @ CUSA | |||
| Utah State | 49 | at | San Jose State | 27 | ||||
| Idaho | 7 | at | Texas State | 38 | ||||
| 10/20/2012 | Idaho | 28 | at | Louisiana Tech | 70 | |||
| San Jose State | 52 | at | Texas-San Antonio | 24 | ||||
| New Mexico State | 7 | at | Utah State | 41 | ||||
| 10/27/2012 | Louisiana Tech | 28 | at | New Mexico State | 14 | |||
| Texas State | 20 | at | San Jose State | 31 | ||||
| Utah State | 48 | at | Texas-San Antonio | 17 | ||||
| 11/3/2012 | New Mexico State | 7 | at | Auburn | 42 | @ SEC | ||
| San Jose State | 42 | at | Idaho | 13 | ||||
| Texas-San Antonio | 27 | at | Louisiana Tech | 51 | ||||
| Texas State | 7 | at | Utah State | 38 | ||||
| 11/10/2012 | Idaho | 13 | at | BYU | 52 | @ Ind | ||
| San Jose State | 47 | at | New Mexico State | 7 | ||||
| Louisiana Tech | 62 | at | Texas State | 55 | ||||
| McNeese State | 24 | at | Texas-San Antonio | 31 | vs SLC (1AA) | |||
| 11/17/2012 | Texas-San Antonio | 34 | at | Idaho | 27 | |||
| Utah State | 48 | at | Louisiana Tech | 41 | OT | |||
| Texas State | 10 | at | Navy | 21 | @ Ind | |||
| BYU | 14 | at | San Jose State | 20 | vs Ind | |||
| 11/24/2012 | BYU | 50 | at | New Mexico State | 14 | vs Ind | ||
| Louisiana Tech | 43 | at | San Jose State | 52 | ||||
| Texas State | 31 | at | Texas-San Antonio | 38 | ||||
| Idaho | 9 | at | Utah State | 45 | ||||
| 12/1/2012 | New Mexico State | 28 | at | Texas State | 66 | |||
| 12/15/2012 | Toledo | 15 | vs | Utah State | 41 | Famous Idaho Potato Bowl | vs MAC | |
| 12/27/2012 | San Jose State | 29 | vs | Bowling Green | 20 | Military Bowl presented by Northrup Grumman | @ MAC |