| 8/31/2012 | San Jose State (11-2) | 17 | at | Stanford | 20 | | | WAC |
| 9/8/2012 | Duke (6-7) | 13 | at | Stanford | 50 | | | ACC |
| 9/15/2012 | Southern California (7-6,5-4) | 14 | at | Stanford | 21 | | | |
| 9/27/2012 | Stanford | 13 | at | Washington (7-6,5-4) | 17 | | | |
| 10/6/2012 | Arizona (8-5,4-5) | 48 | at | Stanford | 54 | OT | | |
| 10/13/2012 | Stanford | 13 | at | Notre Dame (12-1) | 20 | OT | | at ND |
| 10/20/2012 | Stanford | 21 | at | California (3-9,2-7) | 3 | | | |
| 10/27/2012 | Washington State (3-9,1-8) | 17 | at | Stanford | 24 | | | |
| 11/3/2012 | Stanford | 48 | at | Colorado (1-11,1-8) | 0 | | | |
| 11/10/2012 | Oregon State (9-4,6-3) | 23 | at | Stanford | 27 | | | |
| 11/17/2012 | Stanford | 17 | at | Oregon (12-1,8-1) | 14 | OT | | |
| 11/24/2012 | Stanford | 35 | at | UCLA (9-5,6-4) | 17 | | | |
| 11/30/2012 | UCLA (9-5,6-4) | 24 | at | Stanford | 27 | | Pac 12 Championship | |
| 1/1/2013 | Wisconsin (8-6) | 14 | vs | Stanford | 20 | | Rose Bowl Game presented by Vizio | B10 |