| 9/3/2016 | Juniata | 31 | at | Grove City (0-10) | 26 | at TPAC | ||
| 9/10/2016 | Dickinson (1-9,1-8) | 21 | at | Juniata | 42 | |||
| 9/17/2016 | Juniata | 41 | at | Gettysburg (3-7,3-6) | 35 | |||
| 9/24/2016 | Franklin & Marshall (7-4,6-3) | 45 | at | Juniata | 22 | |||
| 10/1/2016 | Juniata | 17 | at | Johns Hopkins (11-1,9-0) | 52 | |||
| 10/15/2016 | Ursinus (2-8,2-7) | 27 | at | Juniata | 38 | |||
| 10/22/2016 | Juniata | 17 | at | Muhlenberg (9-2,8-1) | 56 | |||
| 10/29/2016 | McDaniel (3-7,3-6) | 20 | at | Juniata | 13 | |||
| 11/5/2016 | Moravian (5-5,4-5) | 42 | at | Juniata | 30 | |||
| 11/12/2016 | Juniata | 34 | at | Susquehanna (6-4,6-3) | 63 |
| vs Juniata | vs Other Opponents | Juniata compared to OOs | |
| Record: | 6-4 | 41-53 | |
| Points Scored: | 38.70 | 26.84 | -11.86 |
| Points Allowed: | 28.50 | 29.67 | -1.17 |
| Margin: | 10.20 | -2.83 | -13.03 |
| Total Points: | 67.20 | 56.51 | 10.69 |