| 9/3/2016 | Southern Illinois (4-7) | 30 | at | Florida Atlantic | 38 | MVC (1AA) | ||
| 9/10/2016 | Florida Atlantic | 10 | at | Miami-Florida (9-4) | 38 | at ACC | ||
| 9/17/2016 | Florida Atlantic | 7 | at | Kansas State (9-4) | 63 | at B12 | ||
| 9/24/2016 | Ball State (4-8) | 31 | at | Florida Atlantic | 27 | MAC | ||
| 10/1/2016 | Florida Atlantic | 31 | at | Florida Intl (4-8,4-4) | 33 | |||
| 10/9/2016 | UNC-Charlotte (4-8,3-5) | 28 | at | Florida Atlantic | 23 | |||
| 10/15/2016 | Florida Atlantic | 21 | at | Marshall (3-9,2-6) | 27 | |||
| 10/29/2016 | Western Kentucky (11-3,8-1) | 52 | at | Florida Atlantic | 3 | |||
| 11/5/2016 | Florida Atlantic | 42 | at | Rice (3-9,2-6) | 25 | |||
| 11/12/2016 | UTEP (4-8,2-6) | 31 | at | Florida Atlantic | 35 | |||
| 11/19/2016 | Old Dominion (10-3,7-1) | 42 | at | Florida Atlantic | 24 | |||
| 11/26/2016 | Florida Atlantic | 56 | at | Middle Tenn State (8-5,5-3) | 77 |
| vs Florida Atlantic | vs Other Opponents | Florida Atlantic compared to OOs | |
| Record: | 9-3 | 64-73 | |
| Points Scored: | 39.75 | 30.56 | -9.19 |
| Points Allowed: | 26.42 | 30.65 | -4.23 |
| Margin: | 13.33 | -0.09 | -13.42 |
| Total Points: | 66.17 | 61.21 | 4.96 |