| 9/3/2016 | Boise State | 45 | at | UL Lafayette (6-7) | 10 | at SBC | ||
| 9/10/2016 | Washington State (8-5) | 28 | at | Boise State | 31 | P12 | ||
| 9/24/2016 | Boise State | 38 | at | Oregon State (4-8) | 24 | at P12 | ||
| 10/1/2016 | Utah State (3-9,1-7) | 10 | at | Boise State | 21 | |||
| 10/7/2016 | Boise State | 49 | at | New Mexico (9-4,6-2) | 21 | |||
| 10/15/2016 | Colorado State (7-6,5-3) | 23 | at | Boise State | 28 | |||
| 10/20/2016 | BYU (9-4) | 27 | at | Boise State | 28 | Ind | ||
| 10/29/2016 | Boise State | 28 | at | Wyoming (8-6,6-3) | 30 | |||
| 11/4/2016 | San Jose State (4-8,3-5) | 31 | at | Boise State | 45 | |||
| 11/12/2016 | Boise State | 52 | at | Hawaii (7-7,4-4) | 16 | |||
| 11/18/2016 | UNLV (4-8,3-5) | 25 | at | Boise State | 42 | |||
| 11/25/2016 | Boise State | 20 | at | Air Force (10-3,5-3) | 27 | |||
| 12/27/2016 | Boise State | 12 | vs | Baylor (7-6) | 31 | Cactus Bowl (Phoenix AZ) | vs B12 |
| vs Boise State | vs Other Opponents | Boise State compared to OOs | |
| Record: | 3-10 | 83-71 | |
| Points Scored: | 23.31 | 31.81 | 8.50 |
| Points Allowed: | 33.77 | 29.76 | 4.01 |
| Margin: | -10.46 | 2.05 | 12.51 |
| Total Points: | 57.08 | 61.57 | -4.49 |