| 9/7/2013 | Buffalo State | 41 | at | Cortland | 28 | @ NJAC | ||
| Frostburg State | 3 | at | Geneva | 47 | @ TPAC | |||
| Husson | 7 | at | Hartwick | 33 | vs ECFC | |||
| Moravian | 7 | at | Ithaca | 31 | vs CEN | |||
| St John Fisher | 28 | at | Otterbein | 0 | @ OAC | |||
| Christopher Newport | 17 | at | Salisbury | 10 | vs USASC | |||
| Lewis & Clark | 22 | at | Utica | 42 | vs NWC | |||
| 9/14/2013 | Rensselaer | 24 | at | Alfred | 21 | vs LL | ||
| Brockport State | 40 | at | Buffalo State | 42 | vs NJAC | |||
| Waynesburg | 59 | at | Frostburg State | 49 | vs TPAC | |||
| Hartwick | 51 | at | Morrisville | 34 | @ NJAC | |||
| Washington & Jefferson | 21 | at | St John Fisher | 42 | vs TPAC | |||
| Union NY | 16 | at | Utica | 25 | vs LL | |||
| Salisbury | 27 | at | Wesley | 30 | @ D3IND | |||
| 9/21/2013 | Montclair State | 10 | at | Alfred | 33 | vs NJAC | ||
| Hartwick | 45 | at | Becker | 19 | @ ECFC | |||
| Wisconsin-Whitewater | 55 | at | Buffalo State | 14 | vs WIAC | |||
| Case Western Reserve | 33 | at | Frostburg State | 36 | vs UAA | |||
| Utica | 21 | at | Hobart | 34 | @ LL | |||
| Salisbury | 28 | at | North Carolina Wesleyan | 10 | @ USASC | |||
| Ithaca | 17 | at | Union NY | 3 | @ LL | |||
| 9/28/2013 | Alfred | 34 | at | Brockport State | 28 | @ NJAC | ||
| Ithaca | 24 | at | Buffalo State | 20 | ||||
| Cortland | 25 | at | St John Fisher | 33 | vs NJAC | |||
| 10/5/2013 | Buffalo State | 33 | at | Alfred | 39 | |||
| Ithaca | 9 | at | Hartwick | 21 | ||||
| Frostburg State | 35 | at | St John Fisher | 38 | ||||
| Salisbury | 34 | at | Utica | 0 | ||||
| 10/12/2013 | Utica | 44 | at | Frostburg State | 27 | |||
| St John Fisher | 37 | at | Hartwick | 14 | ||||
| Alfred | 6 | at | Ithaca | 17 | ||||
| Buffalo State | 6 | at | Salisbury | 34 | ||||
| 10/19/2013 | Hartwick | 28 | at | Alfred | 49 | |||
| Frostburg State | 28 | at | Buffalo State | 60 | ||||
| St John Fisher | 35 | at | Salisbury | 42 | ||||
| Ithaca | 26 | at | Utica | 21 | ||||
| 10/26/2013 | Alfred | 32 | at | Frostburg State | 7 | |||
| Salisbury | 17 | at | Hartwick | 0 | ||||
| St John Fisher | 22 | at | Ithaca | 25 | ||||
| Buffalo State | 34 | at | Utica | 19 | ||||
| 11/2/2013 | Salisbury | 21 | at | Alfred | 31 | |||
| Buffalo State | 59 | at | Hartwick | 41 | ||||
| Frostburg State | 0 | at | Ithaca | 23 | ||||
| Utica | 27 | at | St John Fisher | 28 | ||||
| 11/9/2013 | Utica | 31 | at | Alfred | 48 | |||
| St John Fisher | 24 | at | Buffalo State | 6 | ||||
| Hartwick | 41 | at | Frostburg State | 14 | ||||
| Ithaca | 24 | at | Salisbury | 23 | OT | |||
| 11/15/2013 | Frostburg State | 14 | at | Salisbury | 70 | |||
| 11/16/2013 | Cortland | 28 | at | Ithaca | 24 | vs NJAC | ||
| Alfred | 13 | at | St John Fisher | 48 | ||||
| Hartwick | 21 | at | Utica | 10 | ||||
| 11/23/2013 | Cortland | 14 | at | Alfred | 21 | ECAC North Central Bowl | vs NJAC | |
| Framingham State | 17 | at | Ithaca | 20 | D3 Round 1 | vs MSCAC | ||
| St John Fisher | 25 | at | John Carroll | 16 | D3 Round 1 | @ OAC | ||
| Salisbury | 21 | at | Muhlenberg | 19 | ECAC Bowl | @ CEN | ||
| 11/30/2013 | St John Fisher | 27 | at | Hobart | 6 | D3 Round 2 | @ LL | |
| Ithaca | 15 | at | Wesley | 23 | D3 Round 2 | @ D3IND | ||
| 12/7/2013 | St John Fisher | 23 | at | Mary Hardin-Baylor | 45 | D3 Quarterfinals | @ ASWC |