| 9/5/2009 | UC Davis 0 @ Fresno St 51 | |
| 9/12/2009 | Fresno St 31 @ Wisconsin 34 2OT | |
| 9/18/2009 | Boise St 51 @ Fresno St 34 | † |
| 9/26/2009 | Fresno St 20 @ Cincinnati 28 | |
| 10/10/2009 | Fresno St 42 @ Hawaii 17 | † |
| 10/17/2009 | San Jose St 21 @ Fresno St 41 | † |
| 10/24/2009 | Fresno St 34 @ New Mexico St 3 | † |
| 10/31/2009 | Utah St 27 @ Fresno St 31 | † |
| 11/7/2009 | Fresno St 31 @ Idaho 21 | † |
| 11/14/2009 | Fresno St 14 @ Nevada 52 | † |
| 11/21/2009 | Louisiana Tech 28 @ Fresno St 30 | † |
| 12/5/2009 | Fresno St 53 @ Illinois 52 | |
| 12/19/2009 | Fresno St 28 vs Wyoming 35 2OT (New Mexico Bowl) |