| 9/3/2009 | Oregon 8 @ Boise St 19 | |
| 9/12/2009 | Miami-Ohio 0 @ Boise St 48 | |
| 9/18/2009 | Boise St 51 @ Fresno St 34 | † |
| 9/26/2009 | Boise St 49 @ Bowling Green 14 | |
| 10/3/2009 | UC Davis 16 @ Boise St 34 | |
| 10/14/2009 | Boise St 28 @ Tulsa 21 | |
| 10/24/2009 | Boise St 54 @ Hawaii 9 | † |
| 10/31/2009 | San Jose St 7 @ Boise St 45 | † |
| 11/6/2009 | Boise St 45 @ Louisiana Tech 35 | † |
| 11/14/2009 | Idaho 25 @ Boise St 63 | † |
| 11/20/2009 | Boise St 52 @ Utah St 21 | † |
| 11/27/2009 | Nevada 33 @ Boise St 44 | † |
| 12/5/2009 | New Mexico St 7 @ Boise St 42 | † |
| 1/4/2010 | Boise St 17 vs TCU 10 (Fiesta Bowl) |