| 9/1/2016 | Sioux Falls (12-1,11-0) | 49 | at | Saint Cloud State | 13 | | | |
| 9/10/2016 | Saint Cloud State | 27 | at | Upper Iowa (3-8,3-8) | 20 | | | |
| 9/17/2016 | Minnesota State-Mankato (8-3,8-3) | 45 | at | Saint Cloud State | 12 | | | |
| 9/24/2016 | Saint Cloud State | 22 | at | Wayne State NE (3-8,3-8) | 23 | | | |
| 10/1/2016 | Saint Cloud State | 28 | at | Minnesota-Crookston (0-11,0-11) | 7 | | | |
| 10/8/2016 | Mary (1-10,1-10) | 7 | at | Saint Cloud State | 41 | | | |
| 10/15/2016 | Saint Cloud State | 41 | at | Minnesota State-Moorhead (7-4,7-4) | 38 | | | |
| 10/22/2016 | Saint Cloud State | 28 | at | Northern State (6-5,6-5) | 29 | | | |
| 10/29/2016 | Bemidji State (9-3,8-3) | 48 | at | Saint Cloud State | 7 | | | |
| 11/5/2016 | Saint Cloud State | 31 | at | Minot State (3-8,3-8) | 0 | | | |
| 11/12/2016 | Minnesota-Duluth (10-2,10-1) | 48 | at | Saint Cloud State | 34 | | | |