| 9/1/2016 | Upper Iowa (3-8,3-8) | 24 | at | Bemidji State | 38 | | | |
| 9/10/2016 | Bemidji State | 45 | at | Minnesota State-Mankato (8-3,8-3) | 17 | | | |
| 9/17/2016 | Wayne State NE (3-8,3-8) | 17 | at | Bemidji State | 45 | | | |
| 9/24/2016 | Bemidji State | 36 | at | Sioux Falls (12-1,11-0) | 37 | | | |
| 10/1/2016 | Bemidji State | 52 | at | Mary (1-10,1-10) | 3 | | | |
| 10/8/2016 | Northern State (6-5,6-5) | 28 | at | Bemidji State | 31 | OT | | |
| 10/15/2016 | Minot State (3-8,3-8) | 28 | at | Bemidji State | 52 | | | |
| 10/22/2016 | Bemidji State | 47 | at | Minnesota-Duluth (10-2,10-1) | 54 | | | |
| 10/29/2016 | Bemidji State | 48 | at | Saint Cloud State (5-6,5-6) | 7 | | | |
| 11/5/2016 | Minnesota State-Moorhead (7-4,7-4) | 42 | at | Bemidji State | 41 | | | |
| 11/12/2016 | Minnesota-Crookston (0-11,0-11) | 13 | at | Bemidji State | 76 | | | |
| 12/3/2016 | Bemidji State | 36 | vs | Washburn (7-5) | 23 | | Excelsior Springs MO | vs MAIAA |