| 9/3/2016 | Seton Hill (5-6) | 50 | at | Bowie State | 48 | | | PSAC |
| 9/10/2016 | Johnson C Smith (3-7,3-5) | 0 | at | Bowie State | 52 | | | |
| 9/17/2016 | Bowie State | 35 | at | Central Conn (2-9) | 44 | 2OT | | at NE |
| 9/24/2016 | Bowie State | 55 | at | Shaw (2-8,2-5) | 13 | | | |
| 10/1/2016 | Fayetteville State (4-6,4-4) | 3 | at | Bowie State | 37 | | | |
| 10/6/2016 | Bowie State | 21 | at | Chowan (6-4,5-3) | 14 | | | |
| 10/15/2016 | Virginia State (9-2,5-2) | 37 | at | Bowie State | 38 | | | |
| 10/22/2016 | Bowie State | 35 | at | Virginia Union (5-5,5-3) | 42 | | | |
| 10/29/2016 | Bowie State | 41 | at | Lincoln PA (1-9,0-7) | 23 | | | |
| 11/5/2016 | Elizabeth City State (5-5,4-3) | 7 | at | Bowie State | 56 | | | |
| 11/12/2016 | Winston-Salem State (9-3,8-1) | 43 | vs | Bowie State | 33 | | "Salem, VA" | |