| 9/3/2016 | Northern Arizona | 13 | at | Arizona State (5-7) | 44 | at P12 | ||
| 9/10/2016 | Northern Arizona | 20 | at | Western Illinois (6-5) | 34 | at MVC | ||
| 9/17/2016 | New Mexico Highlands (0-11) | 3 | at | Northern Arizona | 73 | RMAC (D2) | ||
| 9/24/2016 | Eastern Washington (12-2,8-0) | 50 | at | Northern Arizona | 35 | |||
| 10/1/2016 | Northern Arizona | 18 | at | Northern Colorado (6-5,4-4) | 21 | |||
| 10/8/2016 | Northern Arizona | 20 | at | Montana State (4-7,2-6) | 14 | |||
| 10/15/2016 | Idaho State (2-9,1-7) | 7 | at | Northern Arizona | 52 | |||
| 10/22/2016 | Montana (6-5,3-5) | 34 | at | Northern Arizona | 45 | |||
| 11/5/2016 | Northern Arizona | 33 | at | Weber State (7-5,7-2) | 20 | |||
| 11/12/2016 | Northern Arizona | 31 | at | North Dakota (9-3,8-0) | 38 | |||
| 11/19/2016 | Southern Utah (6-5,5-3) | 48 | at | Northern Arizona | 21 |
| vs Northern Arizona | vs Other Opponents | Northern Arizona compared to OOs | |
| Record: | 6-5 | 57-59 | |
| Points Scored: | 28.45 | 29.93 | 1.48 |
| Points Allowed: | 32.82 | 32.77 | 0.05 |
| Margin: | -4.37 | -2.84 | 1.53 |
| Total Points: | 61.27 | 62.70 | -1.43 |