| 9/1/2016 | North Dakota | 9 | at | Stony Brook (5-6) | 13 | at CAAF | ||
| 9/10/2016 | North Dakota | 26 | at | Bowling Green (4-8) | 27 | at MAC | ||
| 9/17/2016 | South Dakota (4-7) | 44 | at | North Dakota | 47 | 2OT | MVC | |
| 9/24/2016 | North Dakota | 17 | at | Montana State (4-7,2-6) | 15 | |||
| 10/1/2016 | Cal Poly (7-5,5-3) | 24 | at | North Dakota | 31 | |||
| 10/8/2016 | North Dakota | 40 | at | Sacramento State (2-9,2-7) | 7 | |||
| 10/15/2016 | Southern Utah (6-5,5-3) | 23 | at | North Dakota | 45 | |||
| 10/22/2016 | North Dakota | 28 | at | Idaho State (2-9,1-7) | 21 | |||
| 10/29/2016 | Weber State (7-5,7-2) | 19 | at | North Dakota | 27 | |||
| 11/5/2016 | North Dakota | 23 | at | Northern Colorado (6-5,4-4) | 13 | |||
| 11/12/2016 | Northern Arizona (5-6,4-4) | 31 | at | North Dakota | 38 | |||
| 12/3/2016 | Richmond (10-4) | 27 | at | North Dakota | 24 | 1AA Playoffs | CAAF |
| vs North Dakota | vs Other Opponents | North Dakota compared to OOs | |
| Record: | 3-9 | 59-67 | |
| Points Scored: | 22.00 | 28.18 | 6.18 |
| Points Allowed: | 29.58 | 31.57 | -1.99 |
| Margin: | -7.58 | -3.39 | 4.19 |
| Total Points: | 51.58 | 59.75 | -8.17 |