| 9/2/2016 | Kansas State (9-4) | 13 | at | Stanford | 26 | B12 | ||
| 9/17/2016 | Southern California (10-3,7-2) | 10 | at | Stanford | 27 | |||
| 9/24/2016 | Stanford | 22 | at | UCLA (4-8,2-7) | 13 | |||
| 9/30/2016 | Stanford | 6 | at | Washington (12-2,9-1) | 44 | |||
| 10/8/2016 | Washington State (8-5,7-2) | 42 | at | Stanford | 16 | |||
| 10/15/2016 | Stanford | 17 | at | Notre Dame (4-8) | 10 | at ND | ||
| 10/22/2016 | Colorado (10-4,8-2) | 10 | at | Stanford | 5 | |||
| 10/29/2016 | Stanford | 34 | at | Arizona (3-9,1-8) | 10 | |||
| 11/5/2016 | Oregon State (4-8,3-6) | 15 | at | Stanford | 26 | |||
| 11/12/2016 | Stanford | 52 | at | Oregon (4-8,2-7) | 27 | |||
| 11/19/2016 | Stanford | 45 | at | California (5-7,3-6) | 31 | |||
| 11/26/2016 | Rice (3-9) | 17 | at | Stanford | 41 | CUSA | ||
| 12/30/2016 | Stanford | 25 | vs | North Carolina (8-5) | 23 | Sun Bowl (El Paso TX) | vs ACC |
| vs Stanford | vs Other Opponents | Stanford compared to OOs | |
| Record: | 3-10 | 81-70 | |
| Points Scored: | 20.38 | 33.05 | 12.67 |
| Points Allowed: | 26.31 | 29.32 | -3.01 |
| Margin: | -5.93 | 3.73 | 9.66 |
| Total Points: | 46.69 | 62.37 | -15.68 |