| 9/1/2012 | Jacksonville | 0 | at | Georgia Southern (10-4) | 58 | at SoCon | ||
| 9/8/2012 | Jacksonville | 31 | at | Charleston Southern (5-6) | 10 | at BigS | ||
| 9/15/2012 | Webber International (4-6) | 10 | at | Jacksonville | 33 | NAIAInd (NAIA) | ||
| 9/22/2012 | Jacksonville | 21 | at | Dayton (6-5,5-3) | 17 | |||
| 9/29/2012 | Marist (4-7,3-5) | 14 | at | Jacksonville | 26 | |||
| 10/6/2012 | Jacksonville | 38 | at | Morehead State (4-7,3-5) | 17 | |||
| 10/13/2012 | Jacksonville | 34 | at | Davidson (2-9,2-6) | 24 | |||
| 10/20/2012 | San Diego (8-3,7-1) | 24 | at | Jacksonville | 7 | |||
| 11/3/2012 | Jacksonville | 16 | at | Butler (8-3,7-1) | 19 | |||
| 11/10/2012 | Campbell (1-10,0-8) | 14 | at | Jacksonville | 40 | |||
| 11/17/2012 | Drake (8-3,7-1) | 32 | at | Jacksonville | 29 |
| vs Jacksonville | vs Other Opponents | Jacksonville compared to OOs | |
| Record: | 4-7 | 56-56 | |
| Points Scored: | 21.73 | 25.30 | 3.57 |
| Points Allowed: | 25.00 | 24.75 | 0.25 |
| Margin: | -3.27 | 0.55 | 3.82 |
| Total Points: | 46.73 | 50.05 | -3.32 |