| 9/3/2016 | Husson (8-2) | 28 | at | Alfred | 35 | ECFC | ||
| 9/10/2016 | Alfred | 33 | at | Rensselaer (6-5) | 17 | at LL | ||
| 9/17/2016 | Alfred | 34 | at | Buffalo State (5-5,3-5) | 10 | |||
| 9/24/2016 | Ithaca (5-5,4-4) | 6 | at | Alfred | 20 | |||
| 10/1/2016 | Alfred | 49 | at | Morrisville (1-9,0-8) | 24 | |||
| 10/15/2016 | Cortland (5-6,3-5) | 28 | at | Alfred | 41 | |||
| 10/22/2016 | Alfred | 61 | at | Hartwick (2-8,1-7) | 12 | |||
| 10/29/2016 | Brockport State (7-4,6-2) | 28 | at | Alfred | 30 | |||
| 11/5/2016 | Alfred | 35 | at | Utica (7-4,5-3) | 21 | |||
| 11/12/2016 | St John Fisher (8-3,6-2) | 17 | at | Alfred | 38 | |||
| 11/19/2016 | Bridgewater State MA (8-3) | 27 | at | Alfred | 33 | OT | MSCAC | |
| 11/26/2016 | Western New England (11-2) | 24 | at | Alfred | 40 | NEF | ||
| Western New England (11-2) | 24 | at | Alfred | 40 | NEF | |||
| 12/3/2016 | Mount Union (12-2) | 70 | at | Alfred | 45 | D3 Quarterfinal | OAC |
| vs Alfred | vs Other Opponents | Alfred compared to OOs | |
| Record: | 1-13 | 95-45 | |
| Points Scored: | 24.00 | 33.66 | 9.66 |
| Points Allowed: | 38.14 | 23.53 | 14.61 |
| Margin: | -14.14 | 10.13 | 24.27 |
| Total Points: | 62.14 | 57.19 | 4.95 |