| 9/10/2016 | Jacksonville | 7 | at | Liberty (6-5) | 55 | at BigS | ||
| 9/17/2016 | Edward Waters (1-6) | 7 | at | Jacksonville | 41 | Sun (NAIA) | ||
| 9/24/2016 | Jacksonville | 24 | at | Stetson (4-7,2-6) | 7 | |||
| 10/1/2016 | Duquesne (8-3) | 54 | at | Jacksonville | 35 | NE | ||
| 10/8/2016 | Campbell (5-5,3-4) | vs | Jacksonville | Cancelled WX | ||||
| 10/15/2016 | Dayton (9-2,7-1) | 36 | at | Jacksonville | 16 | |||
| 10/22/2016 | Jacksonville | 61 | at | Morehead State (4-7,3-5) | 49 | |||
| 10/29/2016 | Jacksonville | 35 | at | Davidson (2-9,0-8) | 17 | |||
| 11/5/2016 | Drake (7-4,6-2) | 31 | at | Jacksonville | 27 | |||
| 11/12/2016 | Jacksonville | 39 | at | Valparaiso (4-7,3-5) | 42 | |||
| 11/19/2016 | Marist (5-6,5-3) | 35 | at | Jacksonville | 41 |
| vs Jacksonville | vs Other Opponents | Jacksonville compared to OOs | |
| Record: | 5-5 | 50-56 | |
| Points Scored: | 33.30 | 25.41 | -7.89 |
| Points Allowed: | 32.60 | 27.59 | 5.01 |
| Margin: | 0.70 | -2.18 | -2.88 |
| Total Points: | 65.90 | 53.00 | 12.90 |