| 8/31/2012 | Boise State | 13 | at | Michigan State (7-6) | 17 | at B10 | ||
| 9/15/2012 | Miami-Ohio (4-8) | 12 | at | Boise State | 39 | MAC | ||
| 9/20/2012 | BYU (8-5) | 6 | at | Boise State | 7 | Ind | ||
| 9/29/2012 | Boise State | 32 | at | New Mexico (4-9,1-7) | 29 | |||
| 10/6/2012 | Boise State | 40 | at | Southern Miss (0-12) | 14 | at CUSA | ||
| 10/13/2012 | Fresno State (9-4,7-1) | 10 | at | Boise State | 20 | |||
| 10/20/2012 | UNLV (2-11,2-6) | 7 | at | Boise State | 32 | |||
| 10/27/2012 | Boise State | 45 | at | Wyoming (4-8,3-5) | 14 | |||
| 11/3/2012 | San Diego State (9-4,7-1) | 21 | at | Boise State | 19 | |||
| 11/10/2012 | Boise State | 49 | at | Hawaii (3-9,1-7) | 14 | |||
| 11/17/2012 | Colorado State (4-8,3-5) | 14 | at | Boise State | 42 | |||
| 12/1/2012 | Boise State | 27 | at | Nevada (7-6,4-4) | 21 | |||
| 12/22/2012 | Washington (7-6) | 26 | vs | Boise State | 28 | Maaco Bowl - Las Vegas | P12 |
| vs Boise State | vs Other Opponents | Boise State compared to OOs | |
| Record: | 2-11 | 66-85 | |
| Points Scored: | 15.77 | 27.28 | 11.51 |
| Points Allowed: | 30.23 | 28.23 | 2.00 |
| Margin: | -14.46 | -0.95 | 13.51 |
| Total Points: | 46.00 | 55.51 | -9.51 |