| 8/25/2012 | Tabor | 20 | at | Bacone | 25 | @ CSFL | ||
| Baker | 27 | at | Ottawa | 20 | vs HAAC | |||
| 8/30/2012 | Southwestern | 0 | at | Northwestern IA | 49 | @ GPAC | ||
| 9/1/2012 | Sterling | 6 | at | Benedictine KS | 59 | @ HAAC | ||
| William Penn | 51 | at | Bethel KS | 0 | vs MSFA | |||
| Kansas Wesleyan | 10 | vs | Cumberland TN | 31 | Dyersburg TN | @ MSC | ||
| Friends | 14 | at | Evangel | 27 | @ HAAC | |||
| Missouri Valley | 27 | at | McPherson | 13 | vs HAAC | |||
| St Mary KS | 20 | at | Nebraska Wesleyan | 25 | @ GPAC | |||
| Bethany KS | 13 | at | Southwestern Assemblies of God | 12 | @ CSFL | |||
| 9/8/2012 | McPherson | 14 | at | Bethany KS | 0 | |||
| St Mary KS | 14 | at | Friends | 36 | ||||
| Ottawa | 28 | at | Kansas Wesleyan | 31 | ||||
| Bethel KS | 13 | at | Southwestern | 27 | ||||
| Sterling | 7 | at | Tabor | 12 | ||||
| 9/15/2012 | Bethany KS | 16 | at | Bethel KS | 0 | |||
| Southern Nazarene | 7 | at | Friends | 17 | vs GAC (D2) | |||
| Southwestern | 21 | at | McPherson | 40 | ||||
| St Mary KS | 42 | at | Ottawa | 50 | ||||
| Kansas Wesleyan | 14 | at | Sterling | 11 | ||||
| Haskell | 7 | at | Tabor | 56 | vs NAIAInd | |||
| 9/22/2012 | Kansas Wesleyan | 0 | at | Bethany KS | 16 | |||
| Friends | 18 | at | McPherson | 17 | ||||
| Sterling | 7 | at | Southwestern | 12 | ||||
| Tabor | 37 | at | St Mary KS | 23 | ||||
| 9/29/2012 | Avila | 35 | at | Bethany KS | 19 | vs HAAC | ||
| McPherson | 61 | at | Bethel KS | 9 | ||||
| Southwestern | 38 | at | Haskell | 12 | @ NAIAInd | |||
| Friends | 24 | at | Kansas Wesleyan | 28 | ||||
| St Mary KS | 21 | at | Sterling | 20 | ||||
| Ottawa | 25 | at | Tabor | 21 | ||||
| 10/6/2012 | Bethel KS | 6 | at | Friends | 44 | |||
| Southwestern | 21 | at | Ottawa | 40 | ||||
| Bethany KS | 20 | at | St Mary KS | 34 | ||||
| Kansas Wesleyan | 31 | at | Tabor | 56 | ||||
| 10/13/2012 | Tabor | 44 | at | Bethany KS | 7 | |||
| Sterling | 49 | at | Bethel KS | 0 | ||||
| Southern Nazarene | 44 | at | Kansas Wesleyan | 19 | vs GAC (D2) | |||
| McPherson | 14 | at | Ottawa | 38 | ||||
| Friends | 21 | at | Southwestern | 32 | ||||
| William Penn | 53 | at | St Mary KS | 14 | vs MSFA | |||
| 10/20/2012 | Bethany KS | 7 | at | Friends | 43 | |||
| Bethel KS | 12 | at | Kansas Wesleyan | 51 | ||||
| Southwestern | 7 | at | St Mary KS | 45 | ||||
| Ottawa | 38 | at | Sterling | 21 | ||||
| 10/27/2012 | Sterling | 0 | at | Friends | 21 | |||
| St Mary KS | 26 | at | McPherson | 14 | ||||
| Bethany KS | 20 | at | Ottawa | 56 | ||||
| Kansas Wesleyan | 35 | at | Southwestern | 17 | ||||
| Bethel KS | 6 | at | Tabor | 75 | ||||
| 11/3/2012 | Sterling | 17 | at | Bethany KS | 10 | |||
| St Mary KS | 86 | at | Bethel KS | 6 | ||||
| McPherson | 28 | at | Kansas Wesleyan | 24 | ||||
| Friends | 3 | at | Ottawa | 35 | ||||
| Tabor | 51 | at | Southwestern | 27 | ||||
| 11/10/2012 | Southwestern | 26 | at | Bethany KS | 37 | |||
| Ottawa | 51 | at | Bethel KS | 6 | ||||
| Kansas Wesleyan | 23 | at | St Mary KS | 31 | ||||
| McPherson | 21 | at | Sterling | 9 | ||||
| Friends | 3 | at | Tabor | 31 | ||||
| 11/17/2012 | Ottawa | 21 | at | Missouri Valley | 26 | NAIA playoffs | @ HAAC |