| 9/2/2006 | Paul Quinn NAIA | 20 | @ | Jackson St | 44 | ||||
| 9/16/2006 | Jackson St | 30 | vs | Tennessee St | 31 | OT | Memphis TN | ||
| 9/23/2006 | MS Valley St | 24 | @ | Jackson St | 29 | SWAC | |||
| 9/30/2006 | Jackson St | 29 | @ | Texas Southern | 5 | SWAC | |||
| 10/7/2006 | Jackson St | 19 | vs | Alabama St | 13 | SWAC | Mobile AL | ||
| 10/14/2006 | Southern Univ | 28 | @ | Jackson St | 31 | 2 OT | SWAC | ||
| 10/21/2006 | Jackson St | 7 | @ | Grambling | 36 | SWAC | |||
| 10/28/2006 | Jackson St | 40 | @ | Ark Pine Bluff | 43 | SWAC | |||
| 11/4/2006 | Alabama A&M | 34 | @ | Jackson St | 21 | SWAC | |||
| 11/11/2006 | Prairie View | 7 | @ | Jackson St | 31 | SWAC | |||
| 11/18/2006 | Alcorn St | 32 | @ | Jackson St | 31 | SWAC |