| 8/31/2013 | Jacksonville State | 24 | at | Alabama State (8-4) | 22 | at SWAC | ||
| 9/7/2013 | Jacksonville (5-6) | 13 | at | Jacksonville State | 48 | PIO | ||
| 9/14/2013 | North Alabama (10-3) | 21 | at | Jacksonville State | 24 | 2OT | GSC (D2) | |
| 9/21/2013 | Jacksonville State | 32 | at | Georgia State (0-12) | 26 | OT | at SBC | |
| 9/28/2013 | Murray State (6-6,4-4) | 35 | at | Jacksonville State | 34 | OT | ||
| 10/5/2013 | Jacksonville State | 41 | at | Tennessee-Martin (7-5,5-3) | 27 | |||
| 10/12/2013 | Tennessee State (10-4,6-3) | 31 | at | Jacksonville State | 15 | |||
| 10/26/2013 | Jacksonville State | 34 | at | Tennessee Tech (5-7,2-6) | 14 | |||
| 11/2/2013 | Jacksonville State | 42 | at | Austin Peay (0-12,0-8) | 10 | |||
| 11/9/2013 | Eastern Kentucky (6-6,4-4) | 10 | at | Jacksonville State | 68 | |||
| 11/16/2013 | Jacksonville State | 14 | at | Eastern Illinois (12-2,9-0) | 52 | |||
| 11/23/2013 | SE Missouri State (3-9,2-6) | 34 | at | Jacksonville State | 42 | |||
| 11/30/2013 | Samford (8-5) | 14 | at | Jacksonville State | 55 | FCS Round 1 | SOCON | |
| 12/7/2013 | Jacksonville State | 31 | at | McNeese State (10-3) | 10 | FCS Round 2 | at SLC | |
| 12/14/2013 | Jacksonville State | 24 | at | Eastern Washington (12-3) | 35 | FCS Quarterfinals | at BSKY |
| vs Jacksonville State | vs Other Opponents | Jacksonville State compared to OOs | |
| Record: | 4-11 | 98-76 | |
| Points Scored: | 23.60 | 31.24 | 7.64 |
| Points Allowed: | 35.20 | 27.99 | 7.21 |
| Margin: | -11.60 | 3.25 | 14.85 |
| Total Points: | 58.80 | 59.23 | -0.43 |