| 9/2/2006 | East Carolina | 23 | @ | Navy | 28 | ||||
| 9/9/2006 | Massachusetts | 20 | @ | Navy | 21 | ||||
| 9/16/2006 | Navy | 37 | @ | Stanford | 9 | ||||
| 9/23/2006 | Tulsa | 24 | @ | Navy | 23 | OT | |||
| 9/30/2006 | Navy | 41 | @ | Connecticut | 17 | ||||
| 10/7/2006 | Navy | 24 | @ | Air Force | 17 | ||||
| 10/14/2006 | #16 Rutgers | 34 | @ | Navy | 0 | ||||
| 10/28/2006 | #10 Notre Dame | 38 | @ | Navy | 14 | ||||
| 11/4/2006 | Navy | 38 | @ | Duke | 13 | ||||
| 11/11/2006 | Navy | 49 | vs | Eastern Michigan | 21 | ||||
| 11/18/2006 | Temple | 6 | @ | Navy | 42 | Ind | |||
| 12/2/2006 | Army | 14 | vs | Navy | 26 | Ind | Philadelphia PA | ||
| 12/30/2006 | Navy | 24 | vs | #23 Boston College | 25 | Meineke |