| 8/31/2013 | Menlo (5-5) | 7 | vs | Carroll MT | 51 | | Cheney WA | NAIAIND |
| 9/7/2013 | Montana State-Northern (4-6,4-6) | 3 | at | Carroll MT | 31 | | | |
| 9/14/2013 | Montana Tech (3-7,3-7) | 7 | at | Carroll MT | 21 | | | |
| 9/21/2013 | Carroll MT | 24 | at | Rocky Mountain (9-3,8-2) | 17 | | | |
| 9/28/2013 | Carroll MT | 31 | at | Eastern Oregon (6-5,6-4) | 35 | | | |
| 10/12/2013 | Dickinson State (1-10,0-10) | 7 | at | Carroll MT | 42 | | | |
| 10/19/2013 | Carroll MT | 31 | at | Montana-Western (4-6,4-6) | 7 | | | |
| 10/26/2013 | Carroll MT | 42 | at | Montana State-Northern (4-6,4-6) | 14 | | | |
| 11/2/2013 | Southern Oregon (6-5,6-4) | 30 | at | Carroll MT | 48 | | | |
| 11/9/2013 | Rocky Mountain (9-3,8-2) | 35 | at | Carroll MT | 37 | | | |
| 11/16/2013 | Carroll MT | 48 | at | Dickinson State (1-10,0-10) | 3 | | | |
| 11/23/2013 | Georgetown KY (7-4) | 28 | at | Carroll MT | 38 | | NAIA Round 1 | MSC |
| 11/30/2013 | Missouri Valley (9-3) | 3 | at | Carroll MT | 27 | | NAIA Quarterfinals | HAAC |
| 12/7/2013 | Carroll MT | 27 | at | Cumberlands KY (12-1) | 34 | OT | NAIA Semifinals | at MSC |