| 9/6/2013 | Curry | 28 | at | Worcester Polytechnic | 48 | vs NEF | ||
| 9/7/2013 | Hobart | 30 | at | Dickinson | 7 | @ CEN | ||
| Susquehanna | 28 | at | Merchant Marine | 35 | vs CEN | |||
| Norwich | 7 | at | Rensselaer | 20 | vs ECFC | |||
| Coast Guard | 17 | at | St Lawrence | 21 | vs NEF | |||
| Springfield | 49 | at | Western New England | 40 | @ NEF | |||
| 9/13/2013 | Worcester Polytechnic | 14 | at | Worcester State | 15 | @ MSCAC | ||
| 9/14/2013 | Rensselaer | 24 | at | Alfred | 21 | @ E8 | ||
| Coast Guard | 20 | at | Merchant Marine | 27 | vs NEF | |||
| St Lawrence | 14 | at | Norwich | 3 | @ ECFC | |||
| Husson | 0 | at | Springfield | 36 | vs ECFC | |||
| Rochester | 28 | at | Thiel | 27 | @ TPAC | |||
| Union NY | 16 | at | Utica | 25 | @ E8 | |||
| 9/21/2013 | Rochester | 13 | at | Gallaudet | 37 | @ ECFC | ||
| Utica | 21 | at | Hobart | 34 | vs E8 | |||
| St Lawrence | 23 | at | Morrisville | 28 | @ NJAC | |||
| Springfield | 41 | at | Mount Ida | 0 | @ ECFC | |||
| Castleton State | 8 | at | Rensselaer | 23 | vs ECFC | |||
| Merchant Marine | 7 | at | SUNY-Maritime | 6 | @ ECFC | |||
| Ithaca | 17 | at | Union NY | 3 | vs E8 | |||
| Norwich | 31 | at | Worcester Polytechnic | 14 | vs ECFC | |||
| 9/28/2013 | Hobart | 24 | at | Merchant Marine | 8 | |||
| Springfield | 35 | at | Rochester | 36 | ||||
| St Lawrence | 30 | at | Union NY | 20 | ||||
| Rensselaer | 14 | at | Worcester Polytechnic | 27 | ||||
| 10/5/2013 | Worcester Polytechnic | 7 | at | Hobart | 41 | |||
| Union NY | 27 | at | Springfield | 7 | ||||
| Rochester | 10 | at | St Lawrence | 14 | ||||
| 10/12/2013 | Alfred State | 13 | at | Rochester | 38 | vs D3IND | ||
| Hobart | 49 | at | Springfield | 21 | ||||
| Rensselaer | 13 | at | St Lawrence | 20 | ||||
| Worcester Polytechnic | 6 | at | Union NY | 35 | ||||
| 10/19/2013 | Rochester | 37 | at | Rensselaer | 31 | |||
| Union NY | 30 | at | Western New England | 33 | @ NEF | |||
| 10/26/2013 | Rensselaer | 13 | at | Hobart | 35 | |||
| Union NY | 7 | at | Rochester | 21 | ||||
| St Lawrence | 20 | at | Springfield | 21 | ||||
| Merchant Marine | 26 | at | Worcester Polytechnic | 14 | ||||
| 11/2/2013 | Merchant Marine | 13 | at | Rensselaer | 28 | |||
| Worcester Polytechnic | 15 | at | St Lawrence | 32 | ||||
| Hobart | 41 | at | Union NY | 20 | ||||
| 11/9/2013 | St Lawrence | 7 | at | Hobart | 37 | |||
| Union NY | 27 | at | Merchant Marine | 14 | ||||
| Springfield | 35 | at | Rensselaer | 28 | ||||
| Rochester | 21 | at | Worcester Polytechnic | 31 | ||||
| 11/16/2013 | Hobart | 42 | at | Rochester | 21 | |||
| Worcester Polytechnic | 21 | at | Springfield | 35 | ||||
| Merchant Marine | 0 | at | St Lawrence | 31 | ||||
| Rensselaer | 31 | at | Union NY | 28 | ||||
| 11/23/2013 | Gallaudet | 7 | at | Hobart | 34 | D3 Round 1 | vs ECFC | |
| Norwich | 27 | at | Springfield | 28 | ECAC Bowl | vs ECFC | ||
| 11/30/2013 | St John Fisher | 27 | at | Hobart | 6 | D3 Round 2 | vs E8 |