| 8/31/2012 | Wagner | 3 | at | Florida Atlantic (3-9) | 7 | at SBC | ||
| 9/8/2012 | Wagner | 10 | at | Georgetown (5-6) | 13 | at Pat | ||
| 9/15/2012 | Monmouth NJ (5-5,4-3) | 38 | at | Wagner | 17 | |||
| 9/22/2012 | Wagner | 31 | at | Central Conn (2-8,2-5) | 13 | |||
| 9/29/2012 | Bryant (4-7,4-4) | 21 | at | Wagner | 31 | |||
| 10/6/2012 | Wagner | 12 | at | Sacred Heart (2-9,1-7) | 3 | |||
| 10/20/2012 | Wagner | 31 | at | St Francis PA (5-6,4-4) | 24 | |||
| 10/27/2012 | Robert Morris (4-7,3-5) | 13 | at | Wagner | 23 | |||
| 11/3/2012 | Wagner | 30 | at | Albany NY (9-2,7-1) | 0 | |||
| 11/10/2012 | Holy Cross (2-9) | 30 | at | Wagner | 31 | Pat | ||
| 11/17/2012 | Duquesne (5-6,3-5) | 17 | at | Wagner | 23 | |||
| 11/24/2012 | Colgate (8-4) | 20 | at | Wagner | 31 | FCS Round 1 | Pat | |
| 12/1/2012 | Wagner | 19 | at | Eastern Washington (11-3) | 29 | FCS Round 2 | at BSky |
| vs Wagner | vs Other Opponents | Wagner compared to OOs | |
| Record: | 4-9 | 61-72 | |
| Points Scored: | 17.54 | 26.80 | 9.26 |
| Points Allowed: | 22.46 | 28.83 | -6.37 |
| Margin: | -4.92 | -2.03 | 2.89 |
| Total Points: | 40.00 | 55.63 | -15.63 |