| 8/29/2009 | Shippensburg 23 @ Shepherd 34 | |
| 9/5/2009 | Shepherd 21 @ Bowie St 23 | |
| 9/12/2009 | Shepherd 27 @ Fairmont St 14 | † |
| 9/19/2009 | Seton Hill 27 @ Shepherd 40 | † |
| 9/26/2009 | Charleston WV 30 @ Shepherd 17 | † |
| 10/3/2009 | Shepherd 34 @ Concord 31 | † |
| 10/10/2009 | Shepherd 45 @ WV Wesleyan 6 | † |
| 10/17/2009 | West Liberty St 31 @ Shepherd 30 | † |
| 10/24/2009 | West Virginia St 14 @ Shepherd 55 | † |
| 11/5/2009 | Shepherd 10 @ Glenville St 21 | † |