| 8/26/2006 Virginia-Wise (NAIA) 44 at Brevard (D2) 20 |
| 8/26/2006 Winston-Salem St (1AA) 7 at Catawba (D2) 21 |
| 9/2/2006 Butler (1AA) 10 at Albion (D3) 31 |
| 9/2/2006 Savannah St (1AA) 7 at Benedict (D2) 21 |
| 9/2/2006 Montana St (1AA) 19 at Colorado 10 |
| 9/2/2006 Principia (D3) 20 at Crown (NAIA) 28 |
| 9/2/2006 Richmond (1AA) 13 at Duke 0 |
| 9/2/2006 Montclair St (D3) 21 at Iona (1AA) 7 |
| 9/2/2006 St Ambrose (NAIA) 17 at Loras (D3) 15 |
| 9/2/2006 Portland St (1AA) 17 at New Mexico 6 |
| 9/2/2006 Brevard (D2) 7 at Shorter (NAIA) 39 |
| 9/2/2006 UW-La Crosse (D3) 17 at S Dakota St (1AA) 3 |
| 9/2/2006 North Greenville (D2) 35 at Virginia-Wise (NAIA) 48 |
| 9/2/2006 West Liberty St (D2) 16 at Walsh (NAIA) 42 |
| 9/2/2006 Central Methodist (NAIA) 20 at Westminster MO (D3) 8 |
| 9/3/2006 TCU 17 at Baylor 7 |
| 9/3/2006 Urbana (NAIA) 37 vs Central St (D2) 26 |
| 9/7/2006 Oregon St 14 at Boise St 42 |
| 9/8/2006 New Jersey (D3) 24 at La Salle (1AA) 21 |
| 9/9/2006 Union KY (NAIA) 23 at Chowan (D2) 20 |
| 9/9/2006 Colorado 10 vs Colorado St 14 |
| 9/9/2006 Wingate (D2) 22 at Davidson (1AA) 16 |
| 9/9/2006 Seton Hill (NAIA) 17 at McDaniel (D3) 7 |
| 9/9/2006 Southern Oregon (NAIA) 16 at Menlo (D3) 13 |
| 9/9/2006 Chadron St (D2) 35 at Montana St (1AA) 24 |
| 9/9/2006 Morehead St (1AA) 7 at Newberry (D2) 23 |
| 9/9/2006 Akron 20 at North Carolina St 17 |
| 9/9/2006 North Dakota (D2) 35 at Northern Iowa (1AA) 31 |
| 9/9/2006 New Hampshire (1AA) 34 at Northwestern 17 |
| 9/9/2006 Augsburg (D3) 24 at Northwestern MN (NAIA) 31 |
| 9/9/2006 Stanford 34 at San Jose St 35 |
| 9/9/2006 Delta St (D2) 17 at SF Austin (1AA) 14 |
| 9/9/2006 Jamestown (NAIA) 20 at SW Minnesota St (D2) 17 |
| 9/9/2006 Trinity Int'l (NAIA) 39 at Valparaiso (1AA) 20 |
| 9/9/2006 St Peter's (1AA) 3 at Western Conn St (D3) 21 |
| 9/15/2006 Kansas 31 at Toledo 37 2 OT |
| 9/16/2006 Martin Luther (NAIA) 34 at Blackburn (D3) 7 |
| 9/16/2006 Southern Illinois (1AA) 35 at Indiana 28 |
| 9/16/2006 Shorter (NAIA) 54 at LaGrange (D3) 0 |
| 9/16/2006 Chowan (D2) 7 at Methodist (D3) 31 |
| 9/16/2006 Tulane 32 at Mississippi St 29 |
| 9/16/2006 Minnesota-Morris (NAIA) 62 at Principia (D3) 6 |
| 9/16/2006 Northwestern MN (NAIA) 21 at Rockford (D3) 14 |
| 9/16/2006 North Carolina St 17 at Southern Miss 37 |
| 9/16/2006 Navy 37 at Stanford 9 |
| 9/16/2006 Greenville (D3) 0 at Taylor (NAIA) 13 |
| 9/16/2006 Texas Tech 3 at TCU 12 |
| 9/16/2006 UW-Stout (D3) 36 at Upper Iowa (D2) 34 |
| 9/16/2006 La Salle (1AA) 2 at Ursinus (D3) 6 |
| 9/16/2006 Western Michigan 17 at Virginia 10 |
| 9/16/2006 West Virginia Tech (D2) 0 at Walsh (NAIA) 38 |
| 9/22/2006 Northwestern 21 at Nevada 31 |
| 9/23/2006 N Dakota St (1AA) 29 at Ball State 24 |
| 9/23/2006 Army 27 at Baylor 20 OT |
| 9/23/2006 Oklahoma St 25 at Houston 34 |
| 9/23/2006 Western Conn St (D3) 21 at Iona (1AA) 20 |
| 9/23/2006 West Virginia Tech (D2) 0 at Lambuth (NAIA) 35 |
| 9/23/2006 Missouri-Rolla (D2) 49 at Morehead St (1AA) 37 |
| 9/23/2006 Westminster MO (D3) 0 at Northwestern MN (NAIA) 6 |
| 9/23/2006 Langston (D2) 28 at Prairie View (1AA) 7 |
| 9/23/2006 North Carolina Central (D2) 27 at Southern Univ (1AA) 20 |
| 9/23/2006 UW-River Falls (D3) 8 at St Francis IN (NAIA) 63 |
| 9/30/2006 Navy 41 at Connecticut 17 |
| 9/30/2006 West Liberty St (D2) 21 at Duquesne (1AA) 19 |
| 9/30/2006 Lincoln MO (D2) 10 at Millsaps (D3) 52 |
| 9/30/2006 Langston (D2) 35 at NW Oklahoma St (NAIA) 52 |
| 9/30/2006 Miles (D2) 24 at Savannah St (1AA) 12 |
| 9/30/2006 Chowan (D2) 25 at Southern Virginia (NAIA) 28 |
| 9/30/2006 Cumberland KY (NAIA) 16 at West Virginia Tech (D2) 11 |
| 10/7/2006 West Virginia Tech (D2) 7 at Cumberland TN (NAIA) 42 |
| 10/7/2006 Virginia 21 at East Carolina 31 |
| 10/7/2006 Maranatha Baptist (D3) 6 at Minnesota-Morris (NAIA) 28 |
| 10/7/2006 NW Oklahoma St (NAIA) 41 at Panhandle St (D2) 7 |
| 10/7/2006 Valparaiso (1AA) 14 at St Joseph's (D2) 43 |
| 10/14/2006 Ohio 20 at Illinois 17 |
| 10/14/2006 Concordia-St Paul (D2) 18 at Minn St-Moorhead (D3) 20 |
| 10/14/2006 Austin Peay (1AA) 14 at Missouri-Rolla (D2) 21 |
| 10/14/2006 Bacone (NAIA) 28 at Panhandle St (D2) 24 |
| 10/14/2006 Principia (D3) 7 at Trinity Bible (NAIA) 13 |
| 10/14/2006 Belhaven (NAIA) 39 at West Virginia Tech (D2) 24 |
| 10/21/2006 Cumberland KY (NAIA) 27 at Austin Peay (1AA) 26 OT |
| 10/21/2006 West Virginia Tech (D2) 12 at Georgetown KY (NAIA) 61 |
| 10/27/2006 Rockford (D3) 20 vs Minnesota-Morris (NAIA) 27 |
| 10/27/2006 Westminster MO (D3) 19 vs Northwestern MN (NAIA) 38 |
| 10/27/2006 Principia (D3) 13 vs Trinity Bible (NAIA) 19 |
| 10/28/2006 Dixie State (D2) 20 at Azusa Pacific (NAIA) 38 |
| 10/28/2006 Webber Int'l (NAIA) 28 at Chowan (D2) 0 |
| 10/28/2006 Savannah St (1AA) 6 at Johnson C Smith (D2) 27 |
| 10/28/2006 Husson (D3) 17 at La Salle (1AA) 7 |
| 10/28/2006 Northern St SD (D2) 15 at Minn St-Moorhead (D3) 26 |
| 10/28/2006 Butler (1AA) 20 at Missouri-Rolla (D2) 35 |
| 10/28/2006 Jacksonville (1AA) 6 at North Greenville (D2) 41 |
| 10/28/2006 Cal Poly (1AA) 16 at San Diego St 14 |
| 10/28/2006 West Virginia Tech (D2) 6 at Virginia-Wise (NAIA) 45 |
| 11/4/2006 North Greenville (D2) 44 at Austin Peay (1AA) 35 |
| 11/4/2006 Navy 38 at Duke 13 |
| 11/4/2006 Minn St-Moorhead (D3) 32 at Minnesota-Crookston (D2) 6 |
| 11/4/2006 Chowan (D2) 3 at Wesley (D3) 37 |
| 11/11/2006 Chowan (D2) 0 at Apprentice (D3) 37 |
| 11/11/2006 Waldorf (NAIA) 20 at Buena Vista (D3) 17 |
| 11/11/2006 Southern Oregon (NAIA) 18 at Dixie State (D2) 15 |
| 11/11/2006 Minn St-Moorhead (D3) 22 vs SW Minnesota St (D2) 20 |
| 11/11/2006 Pikeville (NAIA) 19 at West Virginia Tech (D2) 8 |
| 11/23/2006 Tuskegee (D2) 17 at Alabama St (1AA) 10 |
| 11/25/2006 Purdue 35 at Hawaii 42 |
| 11/25/2006 East Carolina 21 at North Carolina St 16 |
| 12/21/2006 BYU 38 vs Oregon 8 |
| 12/24/2006 Arizona St 24 vs Hawaii 41 |
| 1/1/2007 Boise St 43 vs Oklahoma 42 |