| 9/2/2006 | San Jose St | 29 | @ | Washington | 35 | ||||
| 9/9/2006 | Stanford | 34 | @ | San Jose St | 35 | ||||
| 9/23/2006 | Cal Poly | 7 | @ | San Jose St | 17 | ||||
| 9/30/2006 | San Diego St | 10 | @ | San Jose St | 31 | ||||
| 10/14/2006 | Utah St | 14 | @ | San Jose St | 21 | WAC | |||
| 10/21/2006 | San Jose St | 7 | @ | Nevada | 23 | WAC | |||
| 10/28/2006 | Louisiana Tech | 10 | @ | San Jose St | 44 | WAC | |||
| 11/4/2006 | San Jose St | 31 | @ | New Mexico St | 21 | WAC | |||
| 11/11/2006 | #9 Boise St | 23 | @ | San Jose St | 20 | WAC | |||
| 11/18/2006 | San Jose St | 17 | @ | Hawaii | 54 | WAC | |||
| 11/25/2006 | San Jose St | 28 | @ | Idaho | 13 | WAC | |||
| 12/2/2006 | Fresno St | 14 | @ | San Jose St | 24 | WAC | |||
| 12/23/2006 | New Mexico | 12 | vs | San Jose St | 20 | New Mexico |